退耕还林还草工程对陕北地区生态系统服务价值时空演变的影响

基于陕北地区1990、2000、2015年土地利用数据，运用单位面积生态系统价值当量因子法、格网法、探索性空间数据法（ESDA），分析了退耕还林还草工程实施前后生态系统服务价值（ESV）的空间分布和演化规律，探讨了退耕还林还草工程对ESV的影响。结果表明：（1）陕北地区退耕还林还草工程实施效果显著，工程实施后共有297066.15 hm2耕地转化为林地和草地，林草覆盖率由57.33%增长至60.50%。（2）退耕还林还草工程使得陕北地区ESV得到了显著提升。25年间陕北地区ESV共增加了32.82亿元，ESV在工程实施后比工程实施前多增加了5.93亿元，增长主要源于退耕引起林地和草地面积的增加。（3）ESV空间分布上呈显著的“南高北低”分布格局，并表现出正向的集聚性和依存性，ESV热点区和冷点区集聚效果明显，热点区集聚与林地、草地的空间分布相吻合，冷点区集聚与未利用地、耕地和建设用地的空间分布相吻合。（4）受退耕还林还草工程影响，陕北地区中部中等等级和次高ESV分布区域逐渐增大、次热点区空间集聚性逐渐增强，北部次低等级和低等级ESV分布区域逐渐减少、冷点区空间集聚性逐渐减弱。整体而言，陕北地区土地利用类型转移和ESV的增减变化与推行退耕还林还草工程在时间上相呼应、在空间上相匹配，退耕还林还草工程实施使得陕北地区生态环境得到了有效改善，ESV得到了显著提升。     

Testing the stability of transfer functions

In dendroclimatology, testing the stability of transfer functions using cross-calibration verification (CCV) statistics is a common procedure. However, the frequently used statistics reduction of error (RE) and coefficient of efficiency (CE) merely assess the skill of reconstruction for the validation period, which does not necessarily reflect possibly instable regression parameters. Furthermore, the frequently used rigorous threshold of zero which sharply distinguishes between valid and invalid transfer functions is prone to an underestimation of instability. To overcome these drawbacks, we here introduce a new approach – the Bootstrapped Transfer Function Stability test (BTFS). BTFS relies on bootstrapped estimates of the change of model parameters (intercept, slope, and r²) between calibration and verification period as well as the bootstrapped significance of corresponding models. A comparison of BTFS, CCV and a bootstrapped CCV approach (BCCV) applied to 42,000 pseudo-proxy datasets with known properties revealed that BTFS responded more sensitively to instability compared to CCV and BCCV. BTFS performance was significantly affected by sample size (length of calibration period) and noise (explained variance between predictor and predictand). Nevertheless, BTFS performed superior with respect to the detection of instable transfer functions in comparison to CCV.     

Signal Recognition Particle-ribosome Binding Is Sensitive to Nascent Chain Length

The signal recognition particle (SRP) directs ribosome-nascent chain complexes (RNCs) displaying signal sequences to protein translocation channels in the plasma membrane of prokaryotes and endoplasmic reticulum of eukaryotes. It was initially proposed that SRP binds the signal sequence when it emerges from an RNC and that successful binding becomes impaired as translation extends the nascent chain, moving the signal sequence away from SRP on the ribosomal surface. Later studies drew this simple model into question, proposing that SRP binding is unaffected by nascent chain length. Here, we reinvestigate this issue using two novel and independent fluorescence resonance energy transfer assays. We show that the arrival and dissociation rates of SRP binding to RNCs vary according to nascent chain length, resulting in the highest affinity shortly after a functional signal sequence emerges from the ribosome. Moreover, we show that SRP binds RNCs in multiple and interconverting conformations, and that conversely, RNCs exist in two conformations distinguished by SRP interaction kinetics.     

Conserved Loop Cysteines of Vitamin K Epoxide Reductase Complex Subunit 1-like 1 (VKORC1L1) Are Involved in Its Active Site Regeneration

Vitamin K epoxide reductase complex subunit 1 (VKORC1) reduces vitamin K epoxide in the vitamin K cycle for post-translational modification of proteins that are involved in a variety of biological functions. However, the physiological function of VKORC1-like 1 (VKORC1L1), a paralogous enzyme sharing about 50% protein identity with VKORC1, is unknown. Here we determined the structural and functional differences of these two enzymes using fluorescence protease protection (FPP) assay and an in vivo cell-based activity assay. We show that in vivo VKORC1L1 reduces vitamin K epoxide to support vitamin K-dependent carboxylation as efficiently as does VKORC1. However, FPP assays show that unlike VKORC1, VKORC1L1 is a four-transmembrane domain protein with both its termini located in the cytoplasm. Moreover, the conserved loop cysteines, which are not required for VKORC1 activity, are essential for VKORC1L1''s active site regeneration. Results from domain exchanges between VKORC1L1 and VKORC1 suggest that it is VKORC1L1''s overall structure that uniquely allows for active site regeneration by the conserved loop cysteines. Intermediate disulfide trapping results confirmed an intra-molecular electron transfer pathway for VKORC1L1''s active site reduction. Our results allow us to propose a concerted action of the four conserved cysteines of VKORC1L1 for active site regeneration; the second loop cysteine, Cys-58, attacks the active site disulfide, forming an intermediate disulfide with Cys-139; the first loop cysteine, Cys-50, attacks the intermediate disulfide resulting in active site reduction. The different membrane topologies and reaction mechanisms between VKORC1L1 and VKORC1 suggest that these two proteins might have different physiological functions.     

Key factors controlling the size, biomass, and sprouting of Japanese alder swamp forest in Kushiro Mire, Hokkaido, Japan

The interrelation among size, biomass, and sprouting of alder trees was studied to extract the most important hydrochemistrical factors controlling the growth of alder forest in Kushiro Mire, northern Japan. The gradient was mostly explained by chemical variables such as pH, ash content, and P₂O₅, which showed strong positive correlation with each other, and secondarily by fluctuation of the water table (WL, i.e., water level range). These variables are more important than other hydrochemical ones, because neutral and turbid flood water replaces acidic mire water and conveys fine sediment with adsorbed phosphorus, which in turn could regulate the pH and amount of phosphorus. Also, the number of sprouts showed negative correlation mainly with tree size and redox potential (Eh), which suggested a flooded environment. Because of this, the size of alder was suppressed by hydrochemical variables; however, alder individuals producing new sprouts were maintained. We conclude that variation in size, biomass, and sprouting of alder was mainly controlled by acidity and phosphorus availability, and was significantly influenced by water fluctuation.     

Wheat-yellow pumpkin composite flour: Physico-functional,rheological, antioxidant potential and quality properties of pan and flat bread

The impact of yellow pumpkin powder (YP) substitution (5, 10, and 15%) on wheat flour's physico-functional, pasting, gel texture, and dough rheology was studied. Moreover, the nutritional, organoleptic properties and bioactivity of the composite pan and pita bread were evaluated. An improved water holding capacity was noticed for the blended flour than for control. The pasting parameters were declined significantly (p < 0.05) with increasing YP. Composite flours presented a softer gel texture in the presence of YP. Reduced water absorption, increased dough development time, and lower stability for combined flour dough. The bread with YP depicted increased protein, fat, fiber, and mineral contents, while a reduced volume and specific volume were noticed for pan bread. YP incorporated 5% and did not compromise pan and pita bread's color and overall acceptability. Additionally, composite bread depicted higher total phenolics with enhanced antioxidant activities at the higher substitution of YP.     

Network environ analysis for socio-economic water system

Embodied water in a socio-economic system refers to the hidden water contained in products traded from one region or one sector to another and has been the center of concern for water management in recent years. However, most models developed for water system analysis ignore cycling and indirect flows, making it difficult to explain the effects of structure on these factors among sectors. Therefore, those models fail to examine the water utilization efficiency from an integral view. In this study, we investigate an embodied socio-economic water system using network analysis developed originally for ecological systems. In this manner, we identify structural and throughflow indicators, such as Finn Cycling Index, Indirect effects ratio, and aggradation, to show the efficiency of water utilization. The three indicators show different perspectives of the system's efficiency change over time, indicating that only the combination of these three indicators can provide a holistic portray about efficiency. Results showed that the structure influenced the cycling and indirect flows, and from a throughflow perspective, the system depends on large boundary inputs of fresh water. Furthermore, the values of Cycling Index and Indirect effect ratio are much lower than for natural food webs, implying that the policies that led to the structural change and reduction of boundary fresh water inputs do not lead to positive water utilization seen in natural systems. This study provides a novel perspective and methodology for assessing the structure and efficiency of water utilization system with a whole perspective.     

The Pressurized Porous Surface Model: An improved tool to study bacterial behavior under a wide range of environmentally relevant matric potentials

To study bacterial behavior under varying hydration conditions similar to surface soil, we have developed a system called the Pressurized Porous Surface Model (PPSM). Thin liquid films created by imposing a matric potential of − 0.4 MPa impact gene expression and colony development in Pseudomonas putida.